Publications
The group bibliography can be seen on Google Scholar.
Books:
El Hady A. Closed Loop Neuroscience, Academic Press / Elsevier. October 2016.
Published Peer Reviewed Manuscripts:
2024
El Hady, A., Takahashi, D., Sun, R., Akinwale, O., Boyd-Meredith, T., Zhang, Y., ... & Brody, C. D. (2024). Chronic brain functional ultrasound imaging in freely moving rodents performing cognitive tasks. Journal of Neuroscience Methods, 403, 110033.
2023
Calhoun, A. J., & El Hady, A. (2023). Everyone knows what behavior is but they just don’t agree on it. Iscience, 26(11).
2022
Boyd-Meredith, J. T., Piet, A. T., Dennis, E. J., El Hady, A.,# & Brody, C. D.# (2022). Stable choice coding in rat frontal orienting fields across model-predicted changes of mind. Nature Communications, 13(1), 1-12.
Bidari, S., El Hady, A., Davidson, J. D., & Kilpatrick, Z. P. (2022). Stochastic dynamics of social patch foraging decisions. Physical Review Research, 4(3), 033128.
Zhang, Y. S., Takahashi, D. Y., El Hady, A., Liao, D. A., & Ghazanfar, A. A. (2022). Active neural coordination of motor behaviors with internal states. Proceedings of the National Academy of Sciences, 119(39), e2201194119.
2021
Kilpatrick ZP, Davidson JD, El Hady A. Uncertainty drives deviations in normative foraging decision strategies. J R Soc Interface. 2021 Jul;18(180):20210337
Dennis, E. J., El Hady, A., Michaiel, A., Clemens, A., Tervo, D. R. G., Voigts, J., & Datta, S. R. (2021). Systems neuroscience of natural behaviors in rodents. Journal of Neuroscience, 41(5), 911-919.
2019
Alcami P. and El Hady A. Axonal Computations. Front. Cell. Neurosci 2019. 13:413. doi: 10.3389/fncel.2019.00413
El Hady A. , Davidson J., & Gordon, D. M. (2019). An ecological perspective on decision-making. Frontiers in Ecology and Evolution, 7, 461.
Davidson JD, El Hady A. Foraging as an evidence accumulation process. PLoS computational biology. 2019 Jul 24;15(7):e1007060.
2018
Piet AT, El Hady A*,#, Brody CD*,#. Rats adopt the optimal timescale for evidence integration in a dynamic environment. Nature communications. 2018 Oct 15;9(1):4265.
2017
Martin S, Lazzarini M, Dullin C, Balakrishnan S, Gomes FV, Ninkovic M, El Hady A, Pardo LA, Stühmer W, Del-Bel E. SK3 channel overexpression in mice causes hippocampal shrinkage associated with cognitive impairments. Molecular neurobiology. 2017 Mar 1;54(2):1078-91.
2016
Samhaber R*, Schottdorf M*, El Hady A*, Broeking K, Daus A, Thielemann C, Stuehmer W, Wolf F. Growing neuronal islands on multi-electrode arrays using an Accurate Positioning-μCP device. Journal of neuroscience methods. 2016 Jan 15;257:194-203.
2015
El Hady A#, Machta BB#. Mechanical surface waves accompany action potential propagation. Nature communications. 2015 Mar 30;6:6697.
D’Este E, Kamin D, Göttfert F, El Hady A, Hell SW. STED nanoscopy reveals the ubiquity of subcortical cytoskeleton periodicity in living neurons. Cell reports. 2015 Mar 3;10(8):1246-51.
2013
Witt A, Palmigiano A, Neef A, El Hady A, Wolf F, Battaglia D. Controlling the oscillation phase through precisely timed closed-loop optogenetic stimulation: a computational study. Frontiers in neural circuits. 2013 Apr 17;7:49.
El Hady A*, Afshar G*, Bröking K, Schlüter O, Geisel T, Stühmer W, Wolf F. Optogenetic stimulation effectively enhances intrinsically generated network synchrony. Frontiers in neural circuits. 2013 Oct 22;7:167.
Preprints:
2023
Nagy, M., Davidson, J. D., Vásárhelyi, G., Ábel, D., Kubinyi, E., El Hady, A., & Vicsek, T. (2023). Social structure and individuals’ behavior shaped by group composition in long-term tracking of rats. bioRxiv, 2023-03.
2022
El Hady, A.*, Takahashi, D.*, Sun, R., Boyd-Meredith, T., Zhang, Y., Charles, A. S., & Brody, C. D. (2022). Chronic brain functional ultrasound imaging in freely moving rodents performing cognitive tasks. bioRxiv.
2021
Takahashi, D. Y.*, El Hady, A.*, Zhang, Y. S., Liao, D. A., Montaldo, G., Urban, A., & Ghazanfar, A. A. (2021) Social-vocal brain networks in a non-human primate. bioRxiv.
Calhoun, A., & El Hady, A. (2021). What is behavior? No seriously, what is it?. bioRxiv.
2020
Kilpatrick Z., Davidson J., El Hady A. Normative theory of patch foraging decisions. bioRxiv 2020.04.22.055558
2015
El Hady A*., Neef A*., Nagpal J*., Bröking K, Afshar G., Schlüter O., Geisel T., Bamberg E., Fleischmann R., Stühmer W., Wolf F. Continuous Dynamic Photostimulation - inducing in-vivo-like fluctuating conductances with Channelrhodopsins. arXiv:1305.7125[q-bio.NC]
El Hady A*., Afshar G*., Geisel T., Bamberg E., Stühmer W., Wolf F. Enhancing burst activation and propagation in cultured neuronal networks by photo-stimulation
. bioRxiv doi: dx.doi.org/10.1101/027177
*Equally contributing authors
# Corresponding author